3D structure

PDB id
7QG8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the collided E. coli disome - VemP-stalled 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.97 Å

Loop

Sequence
GCCC*GUAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7QG8_059 not in the Motif Atlas
Homologous match to IL_5J7L_059
Geometric discrepancy: 0.0892
The information below is about IL_5J7L_059
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65718.4
Basepair signature
cWW-cSH-cWS-cWW-cWW
Number of instances in this motif group
4

Unit IDs

7QG8|1|0|G|1401
7QG8|1|0|C|1402
7QG8|1|0|C|1403
7QG8|1|0|C|1404
*
7QG8|1|0|G|1497
7QG8|1|0|U|1498
7QG8|1|0|A|1499
7QG8|1|0|A|1500
7QG8|1|0|C|1501

Current chains

Chain 0
16S rRNA

Nearby chains

Chain M
Transfer RNA; tRNA
Chain N
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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