IL_7QG8_082

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7QG8|1|N|G|801, 7QG8|1|N|G|805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QG8_082 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0704

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7QG8|1|N|G|674
7QG8|1|N|A|675
7QG8|1|N|A|676
7QG8|1|N|A|677
7QG8|1|N|C|678
*
7QG8|1|N|G|799
7QG8|1|N|A|800
7QG8|1|N|G|801
7QG8|1|N|A|802
7QG8|1|N|U|803
7QG8|1|N|A|804
7QG8|1|N|G|805
7QG8|1|N|C|806

Current chains

Chain N

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L4

Chain Y

50S ribosomal protein L15