3D structure

PDB id
7QG8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the collided E. coli disome - VemP-stalled 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.97 Å

Loop

Sequence
GAAG*CGGC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7QG8_104 not in the Motif Atlas
Homologous match to IL_5J7L_283
Geometric discrepancy: 0.1069
The information below is about IL_5J7L_283
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

7QG8|1|N|G|1038
7QG8|1|N|A|1039
7QG8|1|N|A|1040
7QG8|1|N|G|1041
*
7QG8|1|N|C|1114
7QG8|1|N|G|1115
7QG8|1|N|G|1116
7QG8|1|N|C|1117

Current chains

Chain N
23S rRNA

Nearby chains

Chain T
50S ribosomal protein L6
Chain Z
50S ribosomal protein L16
Chain i
50S ribosomal protein L25
Chain r
50S ribosomal protein L36

Coloring options:


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