IL_7QG8_114

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QG8_114 not in the Motif Atlas

Homologous match to IL_5J7L_292

Geometric discrepancy: 0.0825

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7QG8|1|N|C|1351
7QG8|1|N|U|1352
7QG8|1|N|A|1353
7QG8|1|N|A|1354
7QG8|1|N|G|1355
*
7QG8|1|N|C|1376
7QG8|1|N|G|1377
7QG8|1|N|A|1378
7QG8|1|N|U|1379
7QG8|1|N|G|1380

Current chains

Chain N

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L2

Chain p

50S ribosomal protein L34