IL_7QGH_009

3D structure

PDB id

7QGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.48 Å

Loop

Sequence

GAAA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGH_009 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.0921

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7QGH|1|0|G|128
7QGH|1|0|A|129
7QGH|1|0|A|130
7QGH|1|0|A|131
*
7QGH|1|0|U|231
7QGH|1|0|G|232
7QGH|1|0|C|233

Current chains

Chain 0

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S16

Chain H

30S ribosomal protein S17

Chain K

30S ribosomal protein S20