IL_7QGH_014

3D structure

PDB id

7QGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.48 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

7QGH|1|0|U|244, 7QGH|1|0|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGH_014 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0773

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

7QGH|1|0|G|242
7QGH|1|0|A|243
7QGH|1|0|U|244
7QGH|1|0|U|245
7QGH|1|0|A|246
7QGH|1|0|G|247
*
7QGH|1|0|C|277
7QGH|1|0|G|278
7QGH|1|0|A|279
7QGH|1|0|C|280
7QGH|1|0|G|281
7QGH|1|0|A|282
7QGH|1|0|U|283
7QGH|1|0|C|284

Current chains

Chain 0

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S12

Chain H

30S ribosomal protein S17