IL_7QGH_156

3D structure

PDB id

7QGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.48 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGH_156 not in the Motif Atlas

Geometric match to IL_7A0S_086

Geometric discrepancy: 0.1676

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

7QGH|1|N|A|2459
7QGH|1|N|U|2460
7QGH|1|N|A|2461
*
7QGH|1|N|U|2489
7QGH|1|N|G|2490
7QGH|1|N|U|2491
7QGH|1|N|U|2492
7QGH|1|N|U|2493

Current chains

Chain N

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L16

Chain u

Transfer RNA; tRNA