IL_7QGN_163

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

7QGN|1|N|G|2780

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGN_163 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1099

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7QGN|1|N|C|2636
7QGN|1|N|U|2637
7QGN|1|N|G|2638
7QGN|1|N|A|2639
7QGN|1|N|G|2640
*
7QGN|1|N|C|2774
7QGN|1|N|G|2775
7QGN|1|N|A|2776
7QGN|1|N|G|2777
7QGN|1|N|A|2778
7QGN|1|N|U|2779
7QGN|1|N|G|2780
7QGN|1|N|A|2781
7QGN|1|N|G|2782

Current chains

Chain N

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L3

Chain W

50S ribosomal protein L13