IL_7QGR_012

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7QGR|1|0|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGR_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1207

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7QGR|1|0|G|147
7QGR|1|0|G|148
7QGR|1|0|A|149
7QGR|1|0|U|150
7QGR|1|0|A|151
7QGR|1|0|A|152
7QGR|1|0|C|153
*
7QGR|1|0|G|168
7QGR|1|0|C|169
7QGR|1|0|U|170
7QGR|1|0|A|171
7QGR|1|0|A|172
7QGR|1|0|U|173
7QGR|1|0|A|174
7QGR|1|0|C|175

Current chains

Chain 0

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S20