IL_7QGR_023

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGR_023 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1204

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7QGR|1|0|G|450
7QGR|1|0|A|451
7QGR|1|0|A|452
7QGR|1|0|G|453
7QGR|1|0|G|454
7QGR|1|0|G|455
*
7QGR|1|0|C|477
7QGR|1|0|A|478
7QGR|1|0|U|479
7QGR|1|0|U|480
7QGR|1|0|G|481
7QGR|1|0|A|482
7QGR|1|0|C|483

Current chains

Chain 0

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S16