IL_7QGR_073

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGR_073 not in the Motif Atlas

Geometric match to IL_5J7L_251

Geometric discrepancy: 0.0786

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7QGR|1|N|C|239
7QGR|1|N|C|240
7QGR|1|N|A|241
7QGR|1|N|G|242
7QGR|1|N|U|243
7QGR|1|N|A|244
7QGR|1|N|G|245
*
7QGR|1|N|C|253
7QGR|1|N|G|254
7QGR|1|N|A|255
7QGR|1|N|A|256
7QGR|1|N|C|257
7QGR|1|N|G|258

Current chains

Chain N

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L15

Chain q

50S ribosomal protein L35