IL_7QGR_118

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

7QGR|1|N|U|1559

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGR_118 not in the Motif Atlas

Geometric match to IL_5J7L_296

Geometric discrepancy: 0.1087

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7QGR|1|N|G|1432
7QGR|1|N|A|1433
7QGR|1|N|A|1434
7QGR|1|N|G|1435
*
7QGR|1|N|C|1557
7QGR|1|N|C|1558
7QGR|1|N|U|1559
7QGR|1|N|G|1560
7QGR|1|N|C|1561

Current chains

Chain N

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L2