IL_7QGU_019

3D structure

PDB id

7QGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.75 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7QGU|1|A|G|848, 7QGU|1|A|G|852

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGU_019 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.2083

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7QGU|1|A|G|721
7QGU|1|A|A|722
7QGU|1|A|A|723
7QGU|1|A|A|724
7QGU|1|A|C|725
*
7QGU|1|A|G|846
7QGU|1|A|A|847
7QGU|1|A|G|848
7QGU|1|A|A|849
7QGU|1|A|U|850
7QGU|1|A|A|851
7QGU|1|A|G|852
7QGU|1|A|C|853

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15