IL_7QGU_107

3D structure

PDB id

7QGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.75 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGU_107 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.1405

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7QGU|1|A|U|2681
7QGU|1|A|U|2682
7QGU|1|A|A|2683
7QGU|1|A|G|2684
7QGU|1|A|U|2685
7QGU|1|A|A|2686
7QGU|1|A|C|2687
*
7QGU|1|A|G|2692
7QGU|1|A|G|2693
7QGU|1|A|A|2694
7QGU|1|A|C|2695
7QGU|1|A|C|2696
7QGU|1|A|G|2697

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

Ribosomal protein L6