IL_7QH7_038

3D structure

PDB id

7QH7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CCCUGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QH7_038 not in the Motif Atlas

Geometric match to IL_9AXU_109

Geometric discrepancy: 0.3652

The information below is about IL_9AXU_109

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7QH7|1|A|C|3119
7QH7|1|A|C|3120
7QH7|1|A|C|3121
7QH7|1|A|U|3122
7QH7|1|A|G|3123
7QH7|1|A|U|3124
7QH7|1|A|A|3125
7QH7|1|A|C|3126
*
7QH7|1|A|G|3131
7QH7|1|A|G|3132
7QH7|1|A|A|3133
7QH7|1|A|C|3134
7QH7|1|A|A|3135
7QH7|1|A|A|3136
7QH7|1|A|G|3137

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain u

Mitochondrial assembly of ribosomal large subunit protein 1