IL_7QIW_008

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

AA*UGU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_008 not in the Motif Atlas

Geometric match to IL_6DLR_003

Geometric discrepancy: 0.2064

The information below is about IL_6DLR_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

7QIW|1|2|A|157
7QIW|1|2|A|158
*
7QIW|1|2|U|257
7QIW|1|2|G|258
7QIW|1|2|U|259

Current chains

Chain 2

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L13

Chain k

60S ribosomal protein L36