IL_7QIW_036

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_036 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1045

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7QIW|1|2|C|844
7QIW|1|2|G|845
7QIW|1|2|A|846
7QIW|1|2|A|847
7QIW|1|2|G|848
*
7QIW|1|2|U|865
7QIW|1|2|G|866
7QIW|1|2|G|867
7QIW|1|2|A|868
7QIW|1|2|G|869

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain T

Ribosomal protein L19

Chain q

60S ribosomal protein eL43