IL_7QIW_044

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

A(PSU)C*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_044 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.1574

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7QIW|1|2|A|1001
7QIW|1|2|PSU|1002
7QIW|1|2|C|1003
*
7QIW|1|2|G|1070
7QIW|1|2|G|1071
7QIW|1|2|U|1072

Current chains

Chain 2

25S rRNA

Nearby chains

Chain I

Thaliana 60S ribosomal protein L7

Chain V

60S ribosomal protein eL21

Chain d

60S ribosomal protein L29