IL_7QIW_046
3D structure
- PDB id
- 7QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- GCCAA(PSU)G*CAAAC
- Length
- 12 nucleotides
- Bulged bases
- 7QIW|1|2|C|1013
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIW_046 not in the Motif Atlas
- Geometric match to IL_4V9F_035
- Geometric discrepancy: 0.2733
- The information below is about IL_4V9F_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38603.1
- Basepair signature
- cWW-cWS-L-R-L-R-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7QIW|1|2|G|1011
7QIW|1|2|C|1012
7QIW|1|2|C|1013
7QIW|1|2|A|1014
7QIW|1|2|A|1015
7QIW|1|2|PSU|1016
7QIW|1|2|G|1017
*
7QIW|1|2|C|1057
7QIW|1|2|A|1058
7QIW|1|2|A|1059
7QIW|1|2|A|1060
7QIW|1|2|C|1061
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain G
- Ribosomal_L18_c domain-containing protein
- Chain L
- 60S ribosomal protein L10
- Chain V
- 60S ribosomal protein eL21
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