IL_7QIW_047

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GAUUA*U(PSU)CUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_047 not in the Motif Atlas

Homologous match to IL_8C3A_044

Geometric discrepancy: 0.2688

The information below is about IL_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7QIW|1|2|G|1017
7QIW|1|2|A|1018
7QIW|1|2|U|1019
7QIW|1|2|U|1020
7QIW|1|2|A|1021
*
7QIW|1|2|U|1053
7QIW|1|2|PSU|1054
7QIW|1|2|C|1055
7QIW|1|2|U|1056
7QIW|1|2|C|1057

Current chains

Chain 2

25S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain G

Ribosomal_L18_c domain-containing protein

Chain L

60S ribosomal protein L10

Chain V

60S ribosomal protein eL21