IL_7QIW_057

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GAUCCCACAAAG*CGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

7QIW|1|2|U|1208, 7QIW|1|2|A|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_057 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.0802

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7QIW|1|2|G|1206
7QIW|1|2|A|1207
7QIW|1|2|U|1208
7QIW|1|2|C|1209
7QIW|1|2|C|1210
7QIW|1|2|C|1211
7QIW|1|2|A|1212
7QIW|1|2|C|1213
7QIW|1|2|A|1214
7QIW|1|2|A|1215
7QIW|1|2|A|1216
7QIW|1|2|G|1217
*
7QIW|1|2|C|1311
7QIW|1|2|G|1312
7QIW|1|2|A|1313
7QIW|1|2|A|1314
7QIW|1|2|A|1315
7QIW|1|2|A|1316
7QIW|1|2|U|1317
7QIW|1|2|G|1318
7QIW|1|2|G|1319
7QIW|1|2|A|1320
7QIW|1|2|U|1321
7QIW|1|2|G|1322
7QIW|1|2|G|1323
7QIW|1|2|C|1324
7QIW|1|2|G|1325
7QIW|1|2|C|1326

Current chains

Chain 2

25S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain E

Ribosomal protein L3

Chain I

Thaliana 60S ribosomal protein L7

Chain L

60S ribosomal protein L10

Chain Q

60S ribosomal protein uL13

Chain h

60S ribosomal protein eL33

Chain o

Ubiquitin-like domain-containing protein