IL_7QIW_089

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGUAAC*GGAAAAG

Length

13 nucleotides

Bulged bases

7QIW|1|2|A|1937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_089 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0567

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7QIW|1|2|C|1924
7QIW|1|2|G|1925
7QIW|1|2|U|1926
7QIW|1|2|A|1927
7QIW|1|2|A|1928
7QIW|1|2|C|1929
*
7QIW|1|2|G|1934
7QIW|1|2|G|1935
7QIW|1|2|A|1936
7QIW|1|2|A|1937
7QIW|1|2|A|1938
7QIW|1|2|A|1939
7QIW|1|2|G|1940

Current chains

Chain 2

25S rRNA

Nearby chains

Chain T

Ribosomal protein L19

Chain q

60S ribosomal protein eL43