IL_7QIW_106

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

A(OMG)CGG*UACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_106 not in the Motif Atlas

Geometric match to IL_8C3A_111

Geometric discrepancy: 0.3598

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

7QIW|1|2|A|2393
7QIW|1|2|OMG|2394
7QIW|1|2|C|2395
7QIW|1|2|G|2396
7QIW|1|2|G|2397
*
7QIW|1|2|U|2990
7QIW|1|2|A|2991
7QIW|1|2|C|2992
7QIW|1|2|U|2993

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain Q

60S ribosomal protein uL13

Chain R

50S ribosomal protein L22, chloroplastic