IL_7QIW_124

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

7QIW|1|2|C|2776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_124 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2065

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7QIW|1|2|G|2774
7QIW|1|2|A|2775
7QIW|1|2|C|2776
7QIW|1|2|C|2777
*
7QIW|1|2|G|2791
7QIW|1|2|C|2792

Current chains

Chain 2

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L13

Chain S

Ribosomal_L18e/L15P domain-containing protein

Chain c

Putative 60S ribosomal protein L27a-3-like

Chain p

60S ribosomal protein eL42