IL_7QIW_145

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

7QIW|1|2|A|3133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_145 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.1445

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

7QIW|1|2|A|3106
7QIW|1|2|U|3107
7QIW|1|2|U|3108
7QIW|1|2|A|3109
7QIW|1|2|U|3110
*
7QIW|1|2|A|3130
7QIW|1|2|G|3131
7QIW|1|2|A|3132
7QIW|1|2|A|3133
7QIW|1|2|U|3134

Current chains

Chain 2

25S rRNA

Nearby chains

Chain K

60S ribosomal protein uL6

Chain Q

60S ribosomal protein uL13

Chain o

Ubiquitin-like domain-containing protein