IL_7QIW_178

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

(PSU)UAAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

7QIW|1|2|A|1233

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_178 not in the Motif Atlas

Homologous match to IL_8P9A_282

Geometric discrepancy: 0.2857

The information below is about IL_8P9A_282

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.3

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

7QIW|1|2|PSU|1230
7QIW|1|2|U|1231
7QIW|1|2|A|1232
7QIW|1|2|A|1233
7QIW|1|2|G|1234
7QIW|1|2|A|1235
7QIW|1|2|C|1236
7QIW|1|2|A|1237
7QIW|1|2|G|1238
*
7QIW|1|2|C|1295
7QIW|1|2|C|1296
7QIW|1|2|G|1297
7QIW|1|2|A|1298
7QIW|1|2|A|1299

Current chains

Chain 2

25S rRNA

Nearby chains

Chain U

60S ribosomal protein L18a

Chain o

Ubiquitin-like domain-containing protein