IL_7QIW_186

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

(OMG)CGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_186 not in the Motif Atlas

Homologous match to IL_8P9A_319

Geometric discrepancy: 0.0989

The information below is about IL_8P9A_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

7QIW|1|2|OMG|2394
7QIW|1|2|C|2395
7QIW|1|2|G|2396
7QIW|1|2|G|2397
*
7QIW|1|2|U|2990
7QIW|1|2|A|2991
7QIW|1|2|C|2992

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain Q

60S ribosomal protein uL13

Chain R

50S ribosomal protein L22, chloroplastic