IL_7QIZ_006
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CCUAGUAAC*GCGAACCG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_006 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.2511
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7QIZ|1|2|C|80
7QIZ|1|2|C|81
7QIZ|1|2|U|82
7QIZ|1|2|A|83
7QIZ|1|2|G|84
7QIZ|1|2|U|85
7QIZ|1|2|A|86
7QIZ|1|2|A|87
7QIZ|1|2|C|88
*
7QIZ|1|2|G|94
7QIZ|1|2|C|95
7QIZ|1|2|G|96
7QIZ|1|2|A|97
7QIZ|1|2|A|98
7QIZ|1|2|C|99
7QIZ|1|2|C|100
7QIZ|1|2|G|101
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L13
- Chain P
- Ribosomal protein L15
- Chain S
- Ribosomal_L18e/L15P domain-containing protein
- Chain c
- Ribosomal_L18e/L15P domain-containing protein
- Chain p
- 60S ribosomal protein eL42
Coloring options: