IL_7QIZ_020

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

7QIZ|1|2|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_020 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.2749

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

7QIZ|1|2|G|447
7QIZ|1|2|G|448
*
7QIZ|1|2|C|487
7QIZ|1|2|U|488
7QIZ|1|2|C|489

Current chains

Chain 2

25S rRNA

Nearby chains

Chain H

Ribosomal_L6e_N domain-containing protein

Chain g

60S ribosomal protein eL32

Chain r

Ribosomal_L28e domain-containing protein