IL_7QIZ_029

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGAUC*GUGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_029 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2884

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7QIZ|1|2|G|735
7QIZ|1|2|G|736
7QIZ|1|2|A|737
7QIZ|1|2|U|738
7QIZ|1|2|C|739
*
7QIZ|1|2|G|750
7QIZ|1|2|U|751
7QIZ|1|2|G|752
7QIZ|1|2|C|753
7QIZ|1|2|A|754
7QIZ|1|2|C|755

Current chains

Chain 2

25S rRNA

Nearby chains

Chain S

Ribosomal_L18e/L15P domain-containing protein

Chain d

60S ribosomal protein L29