IL_7QIZ_036

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_036 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1065

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7QIZ|1|2|C|844
7QIZ|1|2|G|845
7QIZ|1|2|A|846
7QIZ|1|2|A|847
7QIZ|1|2|G|848
*
7QIZ|1|2|U|865
7QIZ|1|2|G|866
7QIZ|1|2|G|867
7QIZ|1|2|A|868
7QIZ|1|2|G|869

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain T

Ribosomal protein L19

Chain q

60S ribosomal protein eL43