IL_7QIZ_039

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

G(OMG)G*UAAUC

Length

8 nucleotides

Bulged bases

7QIZ|1|2|A|930, 7QIZ|1|2|A|931

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_039 not in the Motif Atlas

Homologous match to IL_8C3A_036

Geometric discrepancy: 0.0713

The information below is about IL_8C3A_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

7QIZ|1|2|G|917
7QIZ|1|2|OMG|918
7QIZ|1|2|G|919
*
7QIZ|1|2|U|929
7QIZ|1|2|A|930
7QIZ|1|2|A|931
7QIZ|1|2|U|932
7QIZ|1|2|C|933

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain P

Ribosomal protein L15

Chain R

50S ribosomal protein L22, chloroplastic

Chain l

Ribosomal protein L37