IL_7QIZ_057
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GAUCCCACAAAG*CGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 7QIZ|1|2|U|1208, 7QIZ|1|2|A|1314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_057 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.083
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7QIZ|1|2|G|1206
7QIZ|1|2|A|1207
7QIZ|1|2|U|1208
7QIZ|1|2|C|1209
7QIZ|1|2|C|1210
7QIZ|1|2|C|1211
7QIZ|1|2|A|1212
7QIZ|1|2|C|1213
7QIZ|1|2|A|1214
7QIZ|1|2|A|1215
7QIZ|1|2|A|1216
7QIZ|1|2|G|1217
*
7QIZ|1|2|C|1311
7QIZ|1|2|G|1312
7QIZ|1|2|A|1313
7QIZ|1|2|A|1314
7QIZ|1|2|A|1315
7QIZ|1|2|A|1316
7QIZ|1|2|U|1317
7QIZ|1|2|G|1318
7QIZ|1|2|G|1319
7QIZ|1|2|A|1320
7QIZ|1|2|U|1321
7QIZ|1|2|G|1322
7QIZ|1|2|G|1323
7QIZ|1|2|C|1324
7QIZ|1|2|G|1325
7QIZ|1|2|C|1326
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain E
- Ribosomal protein L3
- Chain I
- Thaliana 60S ribosomal protein L7
- Chain L
- 60S ribosomal protein L10
- Chain Q
- Pectinesterase
- Chain h
- 60S ribosomal protein eL33
- Chain o
- Ubiquitin
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