IL_7QIZ_061

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGC*GGUG

Length

7 nucleotides

Bulged bases

7QIZ|1|2|G|1440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_061 not in the Motif Atlas

Homologous match to IL_8C3A_061

Geometric discrepancy: 0.0568

The information below is about IL_8C3A_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

7QIZ|1|2|C|1388
7QIZ|1|2|G|1389
7QIZ|1|2|C|1390
*
7QIZ|1|2|G|1439
7QIZ|1|2|G|1440
7QIZ|1|2|U|1441
7QIZ|1|2|G|1442

Current chains

Chain 2

25S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain F

Ribos_L4_asso_C domain-containing protein

Chain c

Ribosomal_L18e/L15P domain-containing protein

Chain g

60S ribosomal protein eL32

Chain r

Ribosomal_L28e domain-containing protein