IL_7QIZ_064

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUAGU(A2M)(OMG)C*GCGAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_064 not in the Motif Atlas

Geometric match to IL_4V9F_012

Geometric discrepancy: 0.2786

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7QIZ|1|2|G|1455
7QIZ|1|2|U|1456
7QIZ|1|2|A|1457
7QIZ|1|2|G|1458
7QIZ|1|2|U|1459
7QIZ|1|2|A2M|1460
7QIZ|1|2|OMG|1461
7QIZ|1|2|C|1462
*
7QIZ|1|2|G|2356
7QIZ|1|2|C|2357
7QIZ|1|2|G|2358
7QIZ|1|2|A|2359
7QIZ|1|2|A|2360
7QIZ|1|2|A|2361
7QIZ|1|2|C|2362

Current chains

Chain 2

25S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain F

Ribos_L4_asso_C domain-containing protein

Chain R

50S ribosomal protein L22, chloroplastic