IL_7QIZ_068

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UGAAC*GCA

Length

8 nucleotides

Bulged bases

7QIZ|1|2|C|1525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_068 not in the Motif Atlas

Geometric match to IL_4LFB_037

Geometric discrepancy: 0.3866

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7QIZ|1|2|U|1512
7QIZ|1|2|G|1513
7QIZ|1|2|A|1514
7QIZ|1|2|A|1515
7QIZ|1|2|C|1516
*
7QIZ|1|2|G|1524
7QIZ|1|2|C|1525
7QIZ|1|2|A|1526

Current chains

Chain 2

25S rRNA

Nearby chains

Chain R

50S ribosomal protein L22, chloroplastic

Chain T

Ribosomal protein L19

Chain n

60S ribosomal protein eL39