IL_7QIZ_069
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 7QIZ|1|2|A|1593, 7QIZ|1|2|A|1594
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_069 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.076
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
7QIZ|1|2|C|1543
7QIZ|1|2|U|1544
7QIZ|1|2|A|1545
7QIZ|1|2|A|1546
7QIZ|1|2|G|1547
*
7QIZ|1|2|C|1590
7QIZ|1|2|G|1591
7QIZ|1|2|A|1592
7QIZ|1|2|A|1593
7QIZ|1|2|A|1594
7QIZ|1|2|G|1595
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- 60S ribosomal protein L8
- Chain i
- 60S ribosomal protein eL34
- Chain l
- Ribosomal protein L37
- Chain n
- 60S ribosomal protein eL39
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