IL_7QIZ_076

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GAAGU*AGGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_076 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.1679

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7QIZ|1|2|G|1649
7QIZ|1|2|A|1650
7QIZ|1|2|A|1651
7QIZ|1|2|G|1652
7QIZ|1|2|U|1653
*
7QIZ|1|2|A|1812
7QIZ|1|2|G|1813
7QIZ|1|2|G|1814
7QIZ|1|2|A|1815
7QIZ|1|2|C|1816

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain b

60S ribosomal protein L27

Chain i

60S ribosomal protein eL34