IL_7QIZ_084
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UGGAAUC*GGAGGUA
- Length
- 14 nucleotides
- Bulged bases
- 7QIZ|1|2|U|1721, 7QIZ|1|2|A|1734
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_084 not in the Motif Atlas
- Homologous match to IL_8C3A_079
- Geometric discrepancy: 0.1364
- The information below is about IL_8C3A_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
7QIZ|1|2|U|1716
7QIZ|1|2|G|1717
7QIZ|1|2|G|1718
7QIZ|1|2|A|1719
7QIZ|1|2|A|1720
7QIZ|1|2|U|1721
7QIZ|1|2|C|1722
*
7QIZ|1|2|G|1732
7QIZ|1|2|G|1733
7QIZ|1|2|A|1734
7QIZ|1|2|G|1735
7QIZ|1|2|G|1736
7QIZ|1|2|U|1737
7QIZ|1|2|A|1738
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain HA
- 30S ribosomal protein S15, chloroplastic
- Chain T
- Ribosomal protein L19
- Chain b
- 60S ribosomal protein L27
- Chain e
- 60S ribosomal protein eL30
- Chain q
- 60S ribosomal protein eL43
Coloring options: