IL_7QIZ_089
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CGUAAC*GGAAAAG
- Length
- 13 nucleotides
- Bulged bases
- 7QIZ|1|2|A|1937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_089 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.059
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
7QIZ|1|2|C|1924
7QIZ|1|2|G|1925
7QIZ|1|2|U|1926
7QIZ|1|2|A|1927
7QIZ|1|2|A|1928
7QIZ|1|2|C|1929
*
7QIZ|1|2|G|1934
7QIZ|1|2|G|1935
7QIZ|1|2|A|1936
7QIZ|1|2|A|1937
7QIZ|1|2|A|1938
7QIZ|1|2|A|1939
7QIZ|1|2|G|1940
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain T
- Ribosomal protein L19
- Chain q
- 60S ribosomal protein eL43
- Chain t
- 60S ribosomal protein L41
Coloring options: