IL_7QIZ_109

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

U(OMG)(OMU)U*ACA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_109 not in the Motif Atlas

Geometric match to IL_353D_001

Geometric discrepancy: 0.1682

The information below is about IL_353D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

7QIZ|1|2|U|2411
7QIZ|1|2|OMG|2412
7QIZ|1|2|OMU|2413
7QIZ|1|2|U|2414
*
7QIZ|1|2|A|2815
7QIZ|1|2|C|2816
7QIZ|1|2|A|2817

Current chains

Chain 2

25S rRNA

Nearby chains

Chain F

Ribos_L4_asso_C domain-containing protein

Chain c

Ribosomal_L18e/L15P domain-containing protein