IL_7QIZ_122
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CUGAU*A(OMU)ACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_122 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.2627
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
7QIZ|1|2|C|2722
7QIZ|1|2|U|2723
7QIZ|1|2|G|2724
7QIZ|1|2|A|2725
7QIZ|1|2|U|2726
*
7QIZ|1|2|A|2738
7QIZ|1|2|OMU|2739
7QIZ|1|2|A|2740
7QIZ|1|2|C|2741
7QIZ|1|2|G|2742
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain G
- Ribosomal_L18_c domain-containing protein
- Chain S
- Ribosomal_L18e/L15P domain-containing protein
- Chain V
- 60S ribosomal protein eL21
- Chain d
- 60S ribosomal protein L29
- Chain p
- 60S ribosomal protein eL42
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