IL_7QIZ_123

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UUU*A(OMG)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_123 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.0863

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

7QIZ|1|2|U|2770
7QIZ|1|2|U|2771
7QIZ|1|2|U|2772
*
7QIZ|1|2|A|2794
7QIZ|1|2|OMG|2795
7QIZ|1|2|A|2796

Current chains

Chain 2

25S rRNA

Nearby chains

Chain S

Ribosomal_L18e/L15P domain-containing protein

Chain c

Ribosomal_L18e/L15P domain-containing protein

Chain p

60S ribosomal protein eL42

Chain s

tRNA