IL_7QIZ_126

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7QIZ|1|2|U|2864

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_126 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.0779

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7QIZ|1|2|G|2832
7QIZ|1|2|U|2833
7QIZ|1|2|G|2834
*
7QIZ|1|2|U|2862
7QIZ|1|2|U|2863
7QIZ|1|2|U|2864
7QIZ|1|2|U|2865
7QIZ|1|2|U|2866

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain L

60S ribosomal protein L10