IL_7QIZ_128

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

C(OMC)AAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_128 not in the Motif Atlas

Geometric match to IL_7A0S_087

Geometric discrepancy: 0.1576

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7QIZ|1|2|C|2839
7QIZ|1|2|OMC|2840
7QIZ|1|2|A|2841
7QIZ|1|2|A|2842
7QIZ|1|2|G|2843
*
7QIZ|1|2|C|2853
7QIZ|1|2|G|2854
7QIZ|1|2|A|2855
7QIZ|1|2|C|2856
7QIZ|1|2|G|2857

Current chains

Chain 2

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L10

Chain o

Ubiquitin