IL_7QIZ_133

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UUG*CCA(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_133 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3686

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7QIZ|1|2|U|2895
7QIZ|1|2|U|2896
7QIZ|1|2|G|2897
*
7QIZ|1|2|C|2912
7QIZ|1|2|C|2913
7QIZ|1|2|A|2914
7QIZ|1|2|A2M|2915
7QIZ|1|2|G|2916

Current chains

Chain 2

25S rRNA

Nearby chains

Chain K

60S ribosomal protein uL6

Chain Q

Pectinesterase

Chain X

60S ribosomal protein uL14

Chain o

Ubiquitin