IL_7QIZ_145

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

7QIZ|1|2|A|3133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_145 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.1406

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

7QIZ|1|2|A|3106
7QIZ|1|2|U|3107
7QIZ|1|2|U|3108
7QIZ|1|2|A|3109
7QIZ|1|2|U|3110
*
7QIZ|1|2|A|3130
7QIZ|1|2|G|3131
7QIZ|1|2|A|3132
7QIZ|1|2|A|3133
7QIZ|1|2|U|3134

Current chains

Chain 2

25S rRNA

Nearby chains

Chain K

60S ribosomal protein uL6

Chain Q

Pectinesterase

Chain o

Ubiquitin