IL_7QIZ_148

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

7QIZ|1|2|A|3176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_148 not in the Motif Atlas

Geometric match to IL_4R4V_004

Geometric discrepancy: 0.2961

The information below is about IL_4R4V_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

7QIZ|1|2|G|3175
7QIZ|1|2|A|3176
7QIZ|1|2|C|3177
*
7QIZ|1|2|G|3206
7QIZ|1|2|C|3207

Current chains

Chain 2

25S rRNA

Nearby chains

Chain H

Ribosomal_L6e_N domain-containing protein

Chain O

Ribosomal_L14e domain-containing protein

Chain Q

Pectinesterase

Chain h

60S ribosomal protein eL33