IL_7QIZ_150

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUAAG*CCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_150 not in the Motif Atlas

Geometric match to IL_2OEU_001

Geometric discrepancy: 0.2818

The information below is about IL_2OEU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46387.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7QIZ|1|2|C|3220
7QIZ|1|2|U|3221
7QIZ|1|2|A|3222
7QIZ|1|2|A|3223
7QIZ|1|2|G|3224
*
7QIZ|1|2|C|3251
7QIZ|1|2|C|3252
7QIZ|1|2|G|3253

Current chains

Chain 2

25S rRNA

Nearby chains

Chain O

Ribosomal_L14e domain-containing protein

Chain h

60S ribosomal protein eL33