IL_7QIZ_151

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UUUG*C(OMU)UA

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_151 not in the Motif Atlas

Geometric match to IL_5TBW_129

Geometric discrepancy: 0.2051

The information below is about IL_5TBW_129

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7QIZ|1|2|U|3293
7QIZ|1|2|U|3294
7QIZ|1|2|U|3295
7QIZ|1|2|G|3296
*
7QIZ|1|2|C|3304
7QIZ|1|2|OMU|3305
7QIZ|1|2|U|3306
7QIZ|1|2|A|3307

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain R

50S ribosomal protein L22, chloroplastic

Chain f

60S ribosomal protein eL31